STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02610Hypothetical protein. (74 aa)    
Predicted Functional Partners:
ISM_02615
COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.776
ISM_05110
isoleucyl-tRNA synthetase.
  
     0.587
rpmI
COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
     
 0.526
ISM_02630
COG3492 Uncharacterized protein conserved in bacteria.
       0.525
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
     
 0.517
ISM_02620
COG3931 Predicted N-formylglutamate amidohydrolase.
       0.514
ISM_12180
Tellurite resistance protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.513
ISM_09536
Hypothetical protein.
  
     0.503
ISM_07205
Hypothetical protein.
  
     0.502
ISM_02070
Hypothetical protein.
  
     0.493
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.