STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02790Transcriptional regulator, ArsR family protein; COG0640 Predicted transcriptional regulators. (128 aa)    
Predicted Functional Partners:
ISM_02795
Permease, putative; COG0701 Predicted permeases.
 
  
 0.920
ISM_02780
Hypothetical protein.
       0.561
ISM_02785
uracil-DNA glycosylase, putative; COG1573 Uracil-DNA glycosylase.
       0.556
ISM_14630
Arsenate reductase; COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.510
ISM_07485
Permease, putative; COG0701 Predicted permeases.
 
  
 0.473
nhaA-2
Na+/H+ antiporter family protein; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
       0.471
ISM_14625
COG0798 Arsenite efflux pump ACR3 and related permeases.
 
  
 0.437
ISM_14615
NADPH-dependent FMN reductase; COG0431 Predicted flavoprotein.
 
   
 0.407
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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