STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_02810Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family protein; COG3524 Capsule polysaccharide export protein. (570 aa)    
Predicted Functional Partners:
ISM_02805
Capsular polysaccharide export ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
 
 0.994
ISM_07390
Putative cell surface polysaccharide export ABC-2 transporter permease protein; wzm1Y20833; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
 
 0.965
ISM_07380
Putative cell surface polysaccharide export ABC-2 transporter ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
 
 0.962
ISM_13035
COG3563 Capsule polysaccharide export protein.
 
  
 0.953
ISM_07040
ABC transporter, permease protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
 
 0.948
ISM_13040
COG1596 Periplasmic protein involved in polysaccharide export.
 
  
 0.920
ISM_07385
COG3524 Capsule polysaccharide export protein.
 
  
 
0.892
ISM_04520
Hypothetical protein.
  
    0.857
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; Belongs to the KdsA family.
  
    0.850
ISM_13045
COG3562 Capsule polysaccharide export protein.
 
 
 
 0.826
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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