Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ISM_02825Hypothetical protein. (253 aa)    
Predicted Functional Partners:
ISM_02830
Membrane protein; COG0730 Predicted permeases.
 
     0.953
ISM_02855
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
 
     0.857
ISM_03950
Membrane protein; COG0730 Predicted permeases.
 
     0.801
ISM_02845
Protease, putative; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
 
     0.615
ISM_02840
Ribosomal-protein-alanine acetyltransferase, putative.
       0.566
ISM_02465
Hypothetical protein.
  
     0.517
ISM_02835
COG1280 Putative threonine efflux protein.
       0.516
ISM_14400
Hypothetical protein; COG1154 Deoxyxylulose-5-phosphate synthase.
  
     0.505
ISM_02850
nifU domain protein; COG0694 Thioredoxin-like proteins and domains.
       0.488
ISM_11535
Membrane protein, putative.
  
     0.451
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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