Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ISM_03305tonB domain protein, putative. (384 aa)    
Predicted Functional Partners:
ISM_03310
COG0848 Biopolymer transport protein.
  
 
 0.983
ISM_03315
Proton transporter TolQ; COG0811 Biopolymer transport proteins.
  
 
 0.956
tolB
Translocation protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.953
ISM_04255
Hypothetical protein; COG0460 Homoserine dehydrogenase.
  
 
 0.903
ISM_04250
COG0848 Biopolymer transport protein.
  
 
 0.867
ISM_04260
MotA/TolQ/ExbB proton channel family domain protein; COG0811 Biopolymer transport proteins.
  
 
 0.864
ISM_04235
Putative Hemin receptor protein HmuR; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 0.820
ISM_03290
COG1729 Uncharacterized protein conserved in bacteria.
 
   
 0.816
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.805
ISM_00940
TonB dependent-iron siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 0.804
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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