Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_03310COG0848 Biopolymer transport protein. (133 aa)    
Predicted Functional Partners:
ISM_03315
Proton transporter TolQ; COG0811 Biopolymer transport proteins.
 
 
 0.995
ISM_03305
tonB domain protein, putative.
  
 
 0.983
tolB
Translocation protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.967
ISM_04245
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.941
ISM_04260
MotA/TolQ/ExbB proton channel family domain protein; COG0811 Biopolymer transport proteins.
 
 
 0.930
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.929
bamA
Outer membrane protein, OMP85 family protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.710
ISM_03290
COG1729 Uncharacterized protein conserved in bacteria.
  
  
 0.702
ISM_03320
Hypothetical protein; COG0824 Predicted thioesterase.
 
  
 0.672
ISM_08625
Hypothetical protein.
  
 
 0.661
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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