STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_03410Cellulose synthase-like protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis. (615 aa)    
Predicted Functional Partners:
ISM_03415
COG4124 Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
  
  0.980
ISM_03400
NAD-dependent epimerase/dehydratase family protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
 
 0.957
ISM_00035
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
 0.920
ISM_03405
COG1087 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
   
 0.832
ISM_07025
COG1210 UDP-glucose pyrophosphorylase.
  
 
 0.813
ISM_03565
Hypothetical protein.
  
 
 0.800
ISM_05265
Diguanylate cyclase, putative; COG2200 FOG: EAL domain.
  
 
 0.779
ISM_16705
Glycosyl transferase, group 1 family protein; COG0438 Glycosyltransferase.
    
 0.725
ISM_17070
Hypothetical protein.
  
     0.663
ISM_17085
Hypothetical protein.
  
     0.662
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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