STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_03425Hypothetical protein. (212 aa)    
Predicted Functional Partners:
ISM_09806
Hypothetical protein.
  
     0.603
ISM_05920
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.599
ISM_16370
Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.
  
     0.574
ISM_13915
Hypothetical protein.
  
     0.566
ISM_06085
Helicase, ATP-dependent, putative; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
  
     0.560
ISM_06550
Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators.
  
     0.551
ISM_02760
Membrane protein, putative.
  
     0.544
ISM_02780
Hypothetical protein.
  
     0.542
ISM_03430
Hypothetical protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.542
ISM_03435
Hypothetical protein; COG0053 Predicted Co/Zn/Cd cation transporters.
       0.542
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.