STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_03430Hypothetical protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (151 aa)    
Predicted Functional Partners:
ISM_03435
Hypothetical protein; COG0053 Predicted Co/Zn/Cd cation transporters.
 
    0.957
ISM_06925
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
   
 0.668
cysC
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Catalyzes the synthesis of activated sulfate.
   
 
 0.605
ISM_00215
Hypothetical protein; COG2199 FOG: GGDEF domain.
   
 0.560
ISM_05910
Sensory box histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
    
 0.557
ISM_02460
COG1360 Flagellar motor protein.
    
   0.556
ISM_03425
Hypothetical protein.
       0.542
ISM_06165
Oxidoreductase, short-chain dehydrogenase/reductase family protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 
   0.511
ISM_00440
ABC transporter, permease protein, HisMQ family protein; COG4215 ABC-type arginine transport system, permease component.
  
 0.479
ISM_06625
Response regulator; COG0784 FOG: CheY-like receiver.
    
  0.466
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.