STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_03795COG0687 Spermidine/putrescine-binding periplasmic protein. (351 aa)    
Predicted Functional Partners:
ISM_03810
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 
  0.958
ISM_03805
COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
  0.921
ISM_07905
Polyamine ABC transporter, permease protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 
  0.878
potA
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
  0.859
ISM_07900
Polyamine ABC transporter, permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
  0.823
ISM_04460
Opine/polyamine ABC transporter, permease protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 
  0.816
potA-6
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
  0.806
ISM_03790
Hypothetical protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.799
ISM_04455
Opine/polyamine ABC transporter, permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
  0.711
ISM_03815
Hypothetical protein; COG3450 Predicted enzyme of the cupin superfamily.
 
   
 0.663
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.