STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04005TRAP-T family transporter, large (12 TMs) inner membrane subunit; COG3333 Uncharacterized protein conserved in bacteria. (494 aa)    
Predicted Functional Partners:
ISM_03995
COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.904
ISM_08305
COG3181 Uncharacterized protein conserved in bacteria.
  
 0.865
ISM_13325
TRAP-T family transporter, periplasmic binding protein; COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.856
ISM_07500
COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.852
ISM_12295
COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.850
ISM_04000
Hypothetical protein; COG2409 Predicted drug exporters of the RND superfamily.
  
 
 0.807
ISM_12300
Hypothetical protein.
  
 
 0.573
ISM_08295
TRAP-T family transporter, fused small and large inner membrane subunit; COG3333 Uncharacterized protein conserved in bacteria.
  
  
 
0.556
ISM_04010
Putative glycolate oxidase; COG0277 FAD/FMN-containing dehydrogenases.
       0.547
ISM_04015
Serine--glyoxylate transaminase, putative; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
       0.449
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.