STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_04010Putative glycolate oxidase; COG0277 FAD/FMN-containing dehydrogenases. (977 aa)    
Predicted Functional Partners:
ISM_01455
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 0.946
ISM_01450
COG2086 Electron transfer flavoprotein, beta subunit.
  
 0.945
ISM_06100
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
 0.941
ISM_04900
Iron-sulfur cluster-binding protein; COG1145 Ferredoxin.
    
 0.940
ISM_06675
Phosphate acetyltransferase; COG0281 Malic enzyme.
  
 
 0.936
ISM_09586
Malate dehydrogenase; COG0281 Malic enzyme.
  
 
 0.936
ISM_14700
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
    
 0.934
ISM_05245
Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 0.914
ISM_10720
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
    
 0.914
ISM_03915
2-oxoisovalerate dehydrogenase beta subunit; COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
   
 0.904
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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