STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04025Threonine aldolase, low-specificity; COG3616 Predicted amino acid aldolase or racemase. (387 aa)    
Predicted Functional Partners:
ISM_04020
Pyridoxal-phosphate dependent enzyme; COG1171 Threonine dehydratase.
 
  
 0.920
ISM_04030
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
   
 0.912
ISM_04015
Serine--glyoxylate transaminase, putative; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
 
     0.811
ISM_04010
Putative glycolate oxidase; COG0277 FAD/FMN-containing dehydrogenases.
  
    0.631
ISM_01540
Phospholipase D/Transphosphatidylase; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
   
    0.499
ISM_08490
Dioxygenase superfamily-like protein; COG0346 Lactoylglutathione lyase and related lyases.
   
 
  0.465
ISM_05960
Hypothetical protein.
  
 
  0.463
ISM_07130
Proteinase; COG0693 Putative intracellular protease/amidase.
    
  0.455
ISM_12455
COG1760 L-serine deaminase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
   
 
  0.451
ISM_04005
TRAP-T family transporter, large (12 TMs) inner membrane subunit; COG3333 Uncharacterized protein conserved in bacteria.
       0.401
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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