STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04025Threonine aldolase, low-specificity; COG3616 Predicted amino acid aldolase or racemase. (387 aa)    
Predicted Functional Partners:
ISM_04020
Pyridoxal-phosphate dependent enzyme; COG1171 Threonine dehydratase.
 
  
 0.983
ISM_04015
Serine--glyoxylate transaminase, putative; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
 
  
  0.970
ISM_04030
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
   
 0.899
ISM_17005
Probable serine-glyoxylate aminotransferase; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
 
  
  0.878
ISM_09025
Putative glycolate oxidase subunit protein; COG0277 FAD/FMN-containing dehydrogenases.
  
 
  0.863
ISM_09030
Glycolate oxidase, GlcD subunit; COG0277 FAD/FMN-containing dehydrogenases.
  
 
  0.863
ISM_04685
Serine--glyoxylate transaminase, putative; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
    
  0.855
ISM_14455
COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.852
ISM_08435
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
     
 0.851
ISM_09020
Glycolate oxidase, iron-sulfur subunit; COG0247 Fe-S oxidoreductase.
    
  0.851
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.