STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04070Hypothetical protein; COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain. (150 aa)    
Predicted Functional Partners:
ISM_04075
Hypothetical protein; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
  
 0.951
ISM_04045
Probable substrate-binding protein; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.785
ISM_04060
ABC transporter ATP-binding protein; COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
     0.781
ISM_04055
ABC transporter permease protein; COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.780
ISM_04050
ABC transporter permease protein; COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
     0.760
ISM_04065
ABC transporter ATP-binding protein; COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
     0.757
ISM_04120
Hypothetical protein; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
  
 0.429
ISM_05375
osmC-like family protein; COG1073 Hydrolases of the alpha/beta superfamily.
  
    0.421
ISM_10715
Acetyltransferase (GNAT) family protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
  
  0.414
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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