STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04145Copper-binding protein, plastocyanin/azurin family protein; COG4454 Uncharacterized copper-binding protein. (171 aa)    
Predicted Functional Partners:
ISM_17450
Hypothetical protein; COG2132 Putative multicopper oxidases.
 
 
 0.895
ISM_04160
COG3667 Uncharacterized protein involved in copper resistance.
 
  
 0.885
ISM_04155
COG2132 Putative multicopper oxidases.
 
 
 0.828
ISM_17515
COG2132 Putative multicopper oxidases.
 
 
 0.789
ISM_11910
COG2132 Putative multicopper oxidases.
 
 
 0.775
ISM_17635
COG2132 Putative multicopper oxidases.
 
 
 0.734
ISM_17455
COG1538 Outer membrane protein.
 
     0.684
ISM_04150
Hypothetical protein.
       0.493
ISM_17435
COG2217 Cation transport ATPase.
     
 0.465
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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