STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04230Hemin degrading factor; COG3720 Putative heme degradation protein. (351 aa)    
Predicted Functional Partners:
ISM_04225
Putative hemin binding periplasmic transmembrane protein; COG4558 ABC-type hemin transport system, periplasmic component.
 
  
 0.994
hmuV
Putative hemin transport system atp-binding abc transporter protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
  
 0.993
ISM_04220
Permease protein of ABC transporter; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.940
ISM_04235
Putative Hemin receptor protein HmuR; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.920
ISM_04245
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
   
 0.776
ISM_04265
COG0718 Uncharacterized protein conserved in bacteria.
 
     0.747
ISM_04260
MotA/TolQ/ExbB proton channel family domain protein; COG0811 Biopolymer transport proteins.
 
  
 0.743
ISM_04250
COG0848 Biopolymer transport protein.
 
   
 0.724
ISM_04255
Hypothetical protein; COG0460 Homoserine dehydrogenase.
 
   
 0.673
ISM_07735
Iron ABC transporter, ATP-binding protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
    
 0.608
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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