STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04290Glycine betaine/proline ABC transporter, permease protein, putative; COG4176 ABC-type proline/glycine betaine transport system, permease component. (513 aa)    
Predicted Functional Partners:
ISM_04295
COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 0.995
ISM_04285
Glycine betaine/L-proline ABC transporter, periplasmic binding protein, putative; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
 
 0.984
ISM_12275
Glycine betaine/proline ABC transporter, ATP-binding protein; COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 0.980
ISM_14500
Glycine betaine/proline ABC transporter, ATP-binding protein; COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 0.980
ISM_15380
Glycine betaine/proline ABC transporter, ATP-binding protein; COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 0.980
ISM_12265
Glycine betaine/proline ABC transporter, periplasmic glycinebetaine/proline-binding protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
 0.925
ISM_14495
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
 
 0.862
ISM_15375
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
 
 0.814
ISM_04300
Putative aminomethyltransferase protein; Belongs to the GcvT family.
       0.777
ISM_04305
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
       0.501
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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