STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04320Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (181 aa)    
Predicted Functional Partners:
ISM_04325
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
  0.945
ISM_04330
Putative decarboxylase.
 
   0.919
ISM_04315
Hypothetical protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.893
ISM_04310
Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators.
 
     0.753
ISM_04335
malonyl-CoA synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
     0.686
ISM_01050
Probable DctM (C4-dicarboxylate permease, large subunit); COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
  0.513
ISM_02995
Putative integral membrane protein, possible transporter; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
  0.513
ISM_03725
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
  0.513
ISM_03875
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
  0.513
ISM_03910
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
  0.513
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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