STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04325Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (413 aa)    
Predicted Functional Partners:
ISM_04320
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.945
ISM_04315
Hypothetical protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.860
ISM_04330
Putative decarboxylase.
 
     0.852
ISM_04335
malonyl-CoA synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
     0.814
ISM_13295
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.708
ISM_03880
TRAP transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.654
ISM_03905
TRAP dicarboxylate transporter, DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.618
ISM_05790
TRAP-T family transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.609
ISM_03005
TRAP dicarboxylate transporter, DctM subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.578
ISM_11890
Putative small integral membrane tranport protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  0.576
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.