STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04330Putative decarboxylase. (418 aa)    
Predicted Functional Partners:
ISM_04320
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.951
ISM_04335
malonyl-CoA synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
  
 0.881
ISM_04325
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.854
ISM_01140
COG0331 (acyl-carrier-protein) S-malonyltransferase.
   
 
  0.784
ISM_01280
acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
     
 0.783
ISM_04315
Hypothetical protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.762
ISM_11890
Putative small integral membrane tranport protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  0.731
ISM_16950
COG0331 (acyl-carrier-protein) S-malonyltransferase.
   
 
  0.718
ISM_15150
Hypothetical protein.
 
  0.686
ISM_04310
Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators.
 
    0.645
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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