STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04360Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites; COG3488 Predicted thiol oxidoreductase. (516 aa)    
Predicted Functional Partners:
ISM_04355
Hypothetical protein; COG3489 Predicted periplasmic lipoprotein.
 
  
 0.985
ISM_04350
COG3490 Uncharacterized protein conserved in bacteria.
 
  
 0.984
ISM_04365
Lipoprotein, putative; COG3487 Uncharacterized iron-regulated protein.
 
    0.983
ISM_00995
Probable bacterioferritin-associated ferredoxin; COG1251 NAD(P)H-nitrite reductase.
 
    0.591
ISM_05125
Ferric iron ABC transporter, periplasmic ferric iron-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component.
 
    0.444
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.