Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04370Probable DSBA oxidoreductase; COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis. (202 aa)    
Predicted Functional Partners:
ISM_01985
COG1393 Arsenate reductase and related proteins, glutaredoxin family.
    
   0.594
ISM_13960
ArsC family protein; COG1393 Arsenate reductase and related proteins, glutaredoxin family; Belongs to the ArsC family.
    
   0.594
ISM_14620
COG1393 Arsenate reductase and related proteins, glutaredoxin family.
    
   0.594
ISM_05855
Possible FlgD protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.570
ISM_04375
Hypothetical extracellular solute-binding protein, family 7 protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
       0.425
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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