STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ISM_04385COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component. (516 aa)    
Predicted Functional Partners:
ISM_04380
Hypothetical permease protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.959
ISM_04375
Hypothetical extracellular solute-binding protein, family 7 protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.900
ISM_07250
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  0.826
ISM_06645
TRAP-T family transporter, small (4 TMs) inner membrane subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.796
ISM_07245
Extracellular solute-binding protein, family 7; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
    0.776
ISM_10311
TRAP transporter, DctP family protein, putative; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.775
ISM_06655
Hypothetical extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.774
ISM_15290
Bacterial extracellular solute-binding protein, family 7 protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.774
ISM_10306
TRAP transporter, DctQ family protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.581
ISM_15145
TRAP dicarboxylate family transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
  
 
0.401
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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