Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ISM_04410Transporter, LysE family protein; COG1280 Putative threonine efflux protein. (212 aa)    
Predicted Functional Partners:
ISM_04415
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
 
     0.839
ISM_04395
Transmembrane amino acid efflux protein; COG1280 Putative threonine efflux protein.
 
   
0.824
ISM_04400
Hypothetical protein.
       0.778
ISM_04405
Hypothetical protein.
       0.778
ISM_02835
COG1280 Putative threonine efflux protein.
  
    0.626
ISM_14825
Lysine exporter family protein (LYSE/YGGA); COG1280 Putative threonine efflux protein.
  
    0.593
ISM_04390
Aminomethyl transferase family protein; COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
       0.543
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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