STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04415DNA-binding protein, putative; COG1396 Predicted transcriptional regulators. (190 aa)    
Predicted Functional Partners:
ISM_04410
Transporter, LysE family protein; COG1280 Putative threonine efflux protein.
 
     0.843
ISM_04400
Hypothetical protein.
       0.790
ISM_04405
Hypothetical protein.
       0.790
ISM_04395
Transmembrane amino acid efflux protein; COG1280 Putative threonine efflux protein.
       0.777
ISM_04390
Aminomethyl transferase family protein; COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
 
 
 0.740
ISM_14140
Hypothetical protein; COG1396 Predicted transcriptional regulators.
 
 
 0.637
ISM_07655
COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
  
 
 0.626
ISM_07665
HipA protein; COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
  
 
 0.626
cobB
COG0846 NAD-dependent protein deacetylases, SIR2 family; Belongs to the sirtuin family. Class III subfamily.
  
 
  0.622
rpoH
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
 
 0.557
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.