STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04420Selenium-binding protein, putative. (450 aa)    
Predicted Functional Partners:
ISM_16325
Methylamine utilization protein MauG, putative; COG1858 Cytochrome c peroxidase.
  
 
 0.971
ISM_04425
Membrane protein, putative.
 
     0.945
ISM_02565
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
  
 0.929
ISM_04905
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
  
 0.929
ISM_10456
COG2010 Cytochrome c, mono- and diheme variants.
  
 0.929
ISM_13230
COG2010 Cytochrome c, mono- and diheme variants.
  
 0.929
ISM_17500
Probable c-type cytochrome; COG2010 Cytochrome c, mono- and diheme variants.
  
 0.929
ISM_07730
Azu1 pseudoazurin (blue copper protein); COG3794 Plastocyanin.
   
   0.919
tolB
Translocation protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.908
ISM_06100
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
  0.859
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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