Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04420Selenium-binding protein, putative. (450 aa)    
Predicted Functional Partners:
ISM_04425
Membrane protein, putative.
 
     0.944
ISM_06100
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
  0.816
ISM_02565
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
  
 0.785
ISM_04905
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
  
 0.785
ISM_10456
COG2010 Cytochrome c, mono- and diheme variants.
  
 0.785
ISM_13230
COG2010 Cytochrome c, mono- and diheme variants.
  
 0.785
ISM_17500
Probable c-type cytochrome; COG2010 Cytochrome c, mono- and diheme variants.
  
 0.785
ISM_16325
Methylamine utilization protein MauG, putative; COG1858 Cytochrome c peroxidase.
  
 
 0.784
ISM_13465
Homocysteine S-methyltransferase family protein; COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
    
  0.756
ISM_15115
Hypothetical protein; COG1410 Methionine synthase I, cobalamin-binding domain.
    
  0.756
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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