STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
ISM_04450Putative extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein. (377 aa)    
Predicted Functional Partners:
ISM_04460
Opine/polyamine ABC transporter, permease protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.967
ISM_07905
Polyamine ABC transporter, permease protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.912
ISM_03810
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.911
ISM_04455
Opine/polyamine ABC transporter, permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.881
potA-3
Probable ATP-binding component of ABC transporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  0.833
potA-6
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  0.796
ISM_03965
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
  
 0.776
ISM_04805
ABC spermidine/putrescine transporter, inner membrane subunit; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
  
 0.776
ISM_07850
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
  
 0.776
ISM_08045
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
  
 0.776
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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