STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04615COG1981 Predicted membrane protein. (168 aa)    
Predicted Functional Partners:
ISM_04620
COG3336 Predicted membrane protein.
 
     0.955
ISM_07950
COG0408 Coproporphyrinogen III oxidase.
    
 0.865
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.826
ISM_04610
COG4244 Predicted membrane protein.
  
     0.774
ISM_04605
COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2.
 
     0.755
ISM_04600
COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
     0.611
ISM_06190
Hypothetical protein; COG0516 IMP dehydrogenase/GMP reductase.
  
     0.605
ISM_06205
COG3861 Uncharacterized protein conserved in bacteria.
  
     0.507
ISM_12610
Cobaltochelatase; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.
     
 0.488
ISM_04625
Glyoxalase family protein; COG0346 Lactoylglutathione lyase and related lyases.
       0.451
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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