STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04625Glyoxalase family protein; COG0346 Lactoylglutathione lyase and related lyases. (124 aa)    
Predicted Functional Partners:
ISM_04630
Redox-sensitive transcriptional activator SoxR; COG0789 Predicted transcriptional regulators.
 
     0.863
ISM_04635
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
    
  0.520
ISM_06365
COG0346 Lactoylglutathione lyase and related lyases.
    
  0.474
ISM_13160
Lactoylglutathione lyase, putative; COG0346 Lactoylglutathione lyase and related lyases.
    
  0.474
ISM_10720
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
    
  0.471
ISM_04615
COG1981 Predicted membrane protein.
       0.451
ISM_04620
COG3336 Predicted membrane protein.
       0.451
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.