Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
ISM_04675Hypothetical protein. (114 aa)    
Predicted Functional Partners:
ftsQ
Cell division protein ftsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
 
 
 
 0.954
ISM_00625
COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 
 
 0.836
ISM_00145
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.824
mrdB
Rod shape-determining protein MreD; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
   
 
 0.792
ISM_02765
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
  
 
 0.791
ISM_05580
Hypothetical protein.
  
     0.728
ISM_16830
Hypothetical protein.
  
     0.701
ISM_06085
Helicase, ATP-dependent, putative; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
  
  
 0.695
ISM_04670
COG1960 Acyl-CoA dehydrogenases.
 
     0.610
ISM_15175
COG1426 Uncharacterized protein conserved in bacteria.
  
    0.583
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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