STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04700Putative function in exopolysaccharide production; COG1596 Periplasmic protein involved in polysaccharide export. (422 aa)    
Predicted Functional Partners:
ISM_07410
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 0.999
ISM_16695
Chain length determinant protein, putative; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 0.887
ISM_03530
Putative UDP-galactose phosphate transferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.884
ISM_07385
COG3524 Capsule polysaccharide export protein.
 
  
 0.842
ISM_07390
Putative cell surface polysaccharide export ABC-2 transporter permease protein; wzm1Y20833; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.833
ISM_13035
COG3563 Capsule polysaccharide export protein.
 
  
 0.816
ISM_05610
COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
 
 0.805
ISM_16690
Exopolysaccharide biosynthesis domain protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).
  
 0.804
ISM_04915
Mrp/NBP35 family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.773
ISM_07095
Putative Mrp (Multidrug resistance-associated proteins) family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.773
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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