STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04765HemY domain protein; COG3071 Uncharacterized enzyme of heme biosynthesis. (525 aa)    
Predicted Functional Partners:
ISM_04760
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
   
 0.908
ISM_04755
Hypothetical protein.
 
     0.756
ISM_11710
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.700
ISM_09326
Putative cytochrome c-type biogenesis protein, cycH; COG4235 Cytochrome c biogenesis factor.
  
     0.689
ISM_06825
Hypothetical protein; COG3893 Inactivated superfamily I helicase.
  
     0.674
ISM_08625
Hypothetical protein.
  
  
 0.665
ISM_04575
Hypothetical protein; COG1562 Phytoene/squalene synthetase.
  
     0.628
tsaD
O-sialoglycoprotein endopeptidase, putative; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.623
ISM_04735
Hypothetical protein.
       0.622
ftsQ
Cell division protein ftsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.621
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.