STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04815COG0687 Spermidine/putrescine-binding periplasmic protein. (352 aa)    
Predicted Functional Partners:
ISM_04805
ABC spermidine/putrescine transporter, inner membrane subunit; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 
 0.965
ISM_04800
COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.961
potA-4
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.906
ISM_08045
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 
 0.886
ISM_08040
COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.879
ISM_03970
ABC putrescine transporter, inner membrane subunit; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.855
ISM_03965
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 
 0.854
ISM_04455
Opine/polyamine ABC transporter, permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.826
ISM_04460
Opine/polyamine ABC transporter, permease protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
 
  0.822
ISM_03805
COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.791
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.