STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_04895Hypothetical protein. (158 aa)    
Predicted Functional Partners:
ISM_04890
Hypothetical protein.
 
    0.990
ISM_04885
Chaperone, TorD family protein; COG3381 Uncharacterized component of anaerobic dehydrogenases.
 
    0.965
ISM_04880
Hypothetical protein.
 
     0.931
ISM_04900
Iron-sulfur cluster-binding protein; COG1145 Ferredoxin.
 
     0.895
ISM_04875
Putative formate dehydrogenase large subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.868
ISM_04865
COG2864 Cytochrome b subunit of formate dehydrogenase.
 
     0.844
ISM_04920
Hypothetical protein; COG0340 Biotin-(acetyl-CoA carboxylase) ligase.
 
    0.827
ISM_04925
Hypothetical protein.
 
     0.816
ISM_04860
WD domain/cytochrome c family protein; COG2319 FOG: WD40 repeat.
 
     0.791
ISM_04910
Hypothetical protein.
 
     0.774
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.