STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_05030Hypothetical protein; COG2030 Acyl dehydratase. (347 aa)    
Predicted Functional Partners:
ISM_13860
COG1960 Acyl-CoA dehydrogenases.
 
 0.979
ISM_08435
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.952
ISM_05040
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.945
ISM_17015
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.920
ISM_09926
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
 0.905
ISM_05035
Hypothetical protein; COG5515 Uncharacterized conserved small protein.
       0.845
ISM_09941
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
 
  
 0.832
ISM_16740
Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.
  
 0.803
ISM_01185
Hypothetical protein; COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 0.802
ISM_02060
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /3-hydroxybutyryl-CoA epimerase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.802
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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