STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_05110isoleucyl-tRNA synthetase. (302 aa)    
Predicted Functional Partners:
ISM_05100
COG2177 Cell division protein.
 
     0.711
ISM_07940
Membrane protein, putative.
  
     0.704
ISM_14795
Hypothetical protein.
  
     0.699
ISM_05105
Cell division ATP-binding protein FtsE; COG2884 Predicted ATPase involved in cell division.
 
     0.688
ISM_06490
Translocase.
  
     0.685
ISM_12440
Lipoprotein, putative.
  
     0.683
ISM_16045
Hypothetical protein.
  
     0.682
ISM_12180
Tellurite resistance protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.678
ISM_00860
Lipoprotein, putative; COG3087 Cell division protein.
  
     0.677
ISM_09826
Peptidoglycan binding domain protein; COG2951 Membrane-bound lytic murein transglycosylase B.
  
    0.672
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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