Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_05125Ferric iron ABC transporter, periplasmic ferric iron-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component. (318 aa)    
Predicted Functional Partners:
ISM_01315
Ferric iron ABC transporter, permease protein; COG1178 ABC-type Fe3+ transport system, permease component.
 
 
 0.990
ISM_15910
ABC transporter, ATPase subunit; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 
 0.883
ISM_04365
Lipoprotein, putative; COG3487 Uncharacterized iron-regulated protein.
  
    0.865
thiP
Thiamin ABC transporter membrane component; COG1178 ABC-type Fe3+ transport system, permease component.
  
 
 0.855
ISM_06800
COG0477 Permeases of the major facilitator superfamily.
  
  
 0.733
ISM_02460
COG1360 Flagellar motor protein.
    
   0.648
ISM_06925
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
    
 0.622
ugpC
Hypothetical protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
  
 
 0.620
potA
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.577
potA-3
Probable ATP-binding component of ABC transporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.576
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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