Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_05140Portal protein, HK97 family protein; COG4695 Phage-related protein. (407 aa)    
Predicted Functional Partners:
ISM_05160
Hypothetical protein.
 
 
 0.974
ISM_05155
COG4653 Predicted phage phi-C31 gp36 major capsid-like protein.
 
 
 
 0.972
ISM_05175
Major tail protein, TP901-1 family protein; COG5437 Predicted secreted protein.
 
   0.958
ISM_05165
Head-tail adaptor, putative; COG5614 Bacteriophage head-tail adaptor.
 
 
 0.956
ISM_05170
Hypothetical protein.
 
 
   0.955
ISM_05195
Hypothetical protein.
 
 
   0.953
ISM_05200
Hypothetical protein.
 
 
   0.952
ISM_05210
Hypothetical protein.
 
   0.952
ISM_05150
Phage prohead protease, HK97 family protein; COG3740 Phage head maturation protease.
 
   
 0.943
ISM_05135
Putative large terminase.
 
   
 0.897
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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