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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crcBCrcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. (126 aa)    
Predicted Functional Partners:
ISM_05335
HAD-superfamily hydrolase, subfamily IA, variant 1; COG0546 Predicted phosphatases.
  
    0.855
ISM_05340
Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
     
 0.851
ISM_05330
Hypothetical protein; COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase.
       0.835
ISM_05325
Glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.516
ISM_05350
Hydroxypyruvate reductase; COG2379 Putative glycerate kinase.
       0.511
ISM_05320
Glutamate/glutamine/aspartate/asparagine ABC transporter, permease protein; COG4597 ABC-type amino acid transport system, permease component.
       0.404
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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