Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_05420Hypothetical protein. (145 aa)    
Predicted Functional Partners:
ISM_15925
Hypothetical protein.
  
 
   0.785
ISM_12180
Tellurite resistance protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.618
ISM_08940
Hypothetical protein.
  
     0.601
ISM_11990
Hypothetical protein.
  
     0.594
ISM_08935
Hypothetical protein.
  
     0.590
ISM_00480
Hypothetical protein; COG5434 Endopolygalacturonase.
 
 
   0.574
ISM_13130
Hypothetical protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.565
ISM_05195
Hypothetical protein.
   
   0.558
ISM_05200
Hypothetical protein.
   
   0.558
ISM_07005
core-2/I-branching enzyme family protein.
  
     0.540
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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