STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_05645Hypothetical protein; COG3443 Predicted periplasmic or secreted protein. (228 aa)    
Predicted Functional Partners:
ISM_14180
Zinc ABC transporter, periplasmic zinc-binding protein; COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin.
 
 
 0.974
znuC
Zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
 
 0.970
ISM_14165
High-affinity zinc uptake system membrane protein ZnuB; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
  
 
 0.965
rpmE
50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
  
  
 0.598
ISM_05305
Phosphoglycerate mutase family protein; COG2062 Phosphohistidine phosphatase SixA.
    
   0.533
ISM_01985
COG1393 Arsenate reductase and related proteins, glutaredoxin family.
    
   0.515
ISM_14620
COG1393 Arsenate reductase and related proteins, glutaredoxin family.
    
   0.515
folE2
Hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
   
    0.493
hutH
COG2986 Histidine ammonia-lyase.
       0.482
hutI
COG1228 Imidazolonepropionase and related amidohydrolases.
       0.482
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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