STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_05775D-aminoacylase (aspartate, glutamate etc); COG3653 N-acyl-D-aspartate/D-glutamate deacylase. (528 aa)    
Predicted Functional Partners:
ISM_05770
Amidohydrolase-like protein; COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.
     0.824
ISM_05780
COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.802
ISM_05785
Probable DctMQ fusion protein (C4-dicarboxylate transporter); COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.799
ISM_05765
Cobalamin synthesis protein/P47K:Cobalamin synthesis CobW, C-terminal; COG0523 Putative GTPases (G3E family).
       0.717
ISM_05790
TRAP-T family transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.570
ISM_04500
Hypothetical protein; COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.
 
     0.540
groS
Chaperonin Cpn10 (GroES); Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
     
 0.460
ISM_13510
Hypothetical protein; COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.
 
     0.415
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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