Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ISM_05855Possible FlgD protein; Required for flagellar hook formation. May act as a scaffolding protein. (227 aa)    
Predicted Functional Partners:
ISM_05860
Flagellar hook-length control protein.
 
 
 0.994
ISM_11350
COG1536 Flagellar motor switch protein.
 
  
 0.982
ISM_01200
COG1868 Flagellar motor switch protein.
 
  
 0.976
ISM_17360
TraF protein; COG0840 Methyl-accepting chemotaxis protein.
  
  
 0.894
ISM_02460
COG1360 Flagellar motor protein.
 
  
 0.874
ISM_04845
ATP-binding region, ATPase-like:Histidine kinase, HAMPregion:Histidine kinase A, N-terminal; COG0642 Signal transduction histidine kinase.
   
    0.655
ISM_09296
Putative two-component sensor histidine kinase protein; COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
   
    0.655
ISM_11180
C4-dicarboxylate transport sensor protein dctB; COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
   
    0.655
ISM_13495
C4-dicarboxylate transport sensor protein DctB, putative; COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
   
    0.655
leuS
COG0495 Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.650
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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