Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_05860Flagellar hook-length control protein. (452 aa)    
Predicted Functional Partners:
ISM_05855
Possible FlgD protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
 
 0.994
ISM_01200
COG1868 Flagellar motor switch protein.
 
  
 0.971
ISM_11350
COG1536 Flagellar motor switch protein.
 
  
 0.948
ISM_17360
TraF protein; COG0840 Methyl-accepting chemotaxis protein.
  
  
 0.869
ISM_05865
Hypothetical protein.
 
     0.738
ISM_05265
Diguanylate cyclase, putative; COG2200 FOG: EAL domain.
   
  
 0.725
ISM_05870
Hypothetical protein.
 
     0.662
ISM_02460
COG1360 Flagellar motor protein.
  
  
 0.607
ISM_14985
Hypothetical protein.
  
     0.586
ISM_01180
Hypothetical protein.
  
     0.570
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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