Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_05925OmpA domain protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (641 aa)    
Predicted Functional Partners:
ISM_05920
Hypothetical protein; COG0419 ATPase involved in DNA repair.
 
     0.918
ISM_15050
COG2825 Outer membrane protein.
 
 
 0.892
ISM_05940
Hypothetical protein.
 
     0.842
tolB
Translocation protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.727
ISM_00500
COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
  
 
 
 0.711
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
       0.674
ISM_02760
Membrane protein, putative.
  
     0.669
ISM_04860
WD domain/cytochrome c family protein; COG2319 FOG: WD40 repeat.
   
  0.669
ISM_02460
COG1360 Flagellar motor protein.
  
 0.668
ISM_09836
Hypothetical protein.
  
     0.668
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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