STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_06005COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component. (435 aa)    
Predicted Functional Partners:
ISM_05995
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.951
ISM_05990
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.937
ISM_06000
COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.934
ISM_06010
Hypothetical protein.
 
     0.884
ISM_05980
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.853
ISM_04045
Probable substrate-binding protein; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
   
 
 0.785
ISM_05885
COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
   
 
 0.785
ISM_08150
ABC transporter, periplasmic substrate-binding protein, putative; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
   
 
 0.785
ISM_04055
ABC transporter permease protein; COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.755
ISM_04050
ABC transporter permease protein; COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.733
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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