Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_06025Hypothetical protein. (76 aa)    
Predicted Functional Partners:
ISM_06030
Hypothetical protein.
       0.741
ISM_03305
tonB domain protein, putative.
  
     0.664
ISM_06630
COG2198 FOG: HPt domain.
  
     0.614
ISM_06035
Alkane-1 monooxygenase, putative.
       0.580
ISM_15640
Hypothetical protein; COG1522 Transcriptional regulators.
  
     0.523
ISM_02145
Hypothetical protein.
  
     0.506
ISM_06040
Formate dehydrogenase, beta subunit; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
       0.488
ISM_09601
Hypothetical protein.
  
     0.480
ISM_00095
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
   
 0.457
ISM_00675
Acetyltransferase, GNAT family protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.419
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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