Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_06045Hypothetical protein. (358 aa)    
Predicted Functional Partners:
ISM_01770
Hypothetical protein; COG0480 Translation elongation factors (GTPases).
  
  0.841
ISM_15925
Hypothetical protein.
  
   0.798
ISM_07005
core-2/I-branching enzyme family protein.
  
     0.773
ISM_07010
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.770
ISM_07015
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.770
ISM_11720
Hypothetical protein.
  
     0.767
ISM_00480
Hypothetical protein; COG5434 Endopolygalacturonase.
 
 
   0.760
ISM_16975
Hypothetical protein; COG0400 Predicted esterase.
  
     0.756
ISM_07000
Hypothetical protein.
  
     0.745
ISM_13045
COG3562 Capsule polysaccharide export protein.
  
     0.742
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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