STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_06185Hypothetical protein. (137 aa)    
Predicted Functional Partners:
ISM_06180
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.965
ISM_06190
Hypothetical protein; COG0516 IMP dehydrogenase/GMP reductase.
 
     0.965
ISM_01555
Hypothetical protein.
  
  
 0.785
ISM_06175
Hypothetical protein.
       0.709
ISM_01535
Ribonuclease BN; COG1295 Predicted membrane protein.
 
     0.639
ISM_06170
COG2323 Predicted membrane protein.
 
     0.593
ISM_02025
COG3861 Uncharacterized protein conserved in bacteria.
  
     0.540
ISM_01540
Phospholipase D/Transphosphatidylase; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
  
     0.472
ISM_04620
COG3336 Predicted membrane protein.
  
     0.453
ISM_04610
COG4244 Predicted membrane protein.
  
     0.443
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.