STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_06190Hypothetical protein; COG0516 IMP dehydrogenase/GMP reductase. (387 aa)    
Predicted Functional Partners:
ISM_06180
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
    0.967
ISM_06185
Hypothetical protein.
 
     0.965
ISM_10166
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
   
  
 0.749
ISM_06175
Hypothetical protein.
       0.709
ISM_10426
COG3258 Cytochrome c.
  
 
 0.704
ISM_00990
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
  
 0.661
ISM_01015
Hypothetical protein; COG3474 Cytochrome c2.
    
 
 0.657
ISM_04840
COG3474 Cytochrome c2.
    
 
 0.657
ISM_04860
WD domain/cytochrome c family protein; COG2319 FOG: WD40 repeat.
    
 
 0.657
ISM_09446
COG3474 Cytochrome c2.
    
 
 0.657
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.